| TRAIN NUMBERS | 631 | 635 | 639 | 645 | 649 | 653 |
| SAN YSIDRO/TIJUANA | 5:14 | 6:22 | 8:29 | 11:29 | 12:59 | 14:14 |
| BEYER BOULEVARD | 5:18 | 6:26 | 8:33 | 11:33 | 13:03 | 14:18 |
| IRIS AVENUE TRANSIT CENTER | 5:21 | 6:29 | 8:36 | 11:36 | 13:06 | 14:21 |
| PALM AVENUE | 5:24 | 6:32 | 8:39 | 11:39 | 13:09 | 14:24 |
| PALOMAR STREET | 5:26 | 6:34 | 8:41 | 11:41 | 13:11 | 14:26 |
| H STREET | 5:30 | 6:38 | 8:45 | 11:45 | 13:15 | 14:30 |
| BAYFRONT/E STREET | 5:32 | 6:40 | 8:47 | 11:47 | 13:17 | 14:32 |
| 24TH STREET | 5:36 | 6:44 | 8:51 | 11:51 | 13:21 | 14:36 |
| 8TH STREET | 5:38 | 6:46 | 8:53 | 11:53 | 13:23 | 14:38 |
| PACIFIC FLEET | 5:40 | 6:48 | 8:55 | 11:55 | 13:25 | 14:40 |
| HARBORSIDE | 5:42 | 6:50 | 8:57 | 11:57 | 13:27 | 14:42 |
| BARRIO LOGAN | 5:44 | 6:52 | 8:59 | 11:59 | 13:29 | 14:44 |
| IMPERIAL & 12TH TRANSIT CENTER | 5:46 | 6:54 | 9:01 | 12:01 | 13:31 | 14:46 |
| PARK & MARKET | 5:48 | 6:56 | 9:03 | 12:03 | 13:33 | 14:48 |
| CITY COLLEGE/SMART CORNER | 5:51 | 6:59 | 9:06 | 12:06 | 13:36 | 14:51 |
| FIFTH AVENUE | 5:53 | 7:01 | 9:08 | 12:08 | 13:38 | 14:53 |
| CIVIC CENTER | 5:55 | 7:03 | 9:10 | 12:10 | 13:40 | 14:55 |
| AMERICA PLAZA | 5:58 | 7:06 | 9:13 | 12:13 | 13:43 | 14:58 |
| SANTA FE DEPOT | 6:00 | 7:08 | 9:15 | 12:15 | 13:45 | 15:00 |
| COUNTY CENTER/LITTLE ITALY | 6:01 | 7:09 | 9:16 | 12:16 | 13:46 | 15:01 |
| MIDDLETOWN/PALM STREET | 6:03 | 7:11 | 9:18 | 12:18 | 13:48 | 15:03 |
| WASHINGTON STREET | 6:05 | 7:13 | 9:20 | 12:20 | 13:50 | 15:05 |
| OLD TOWN TRANSIT CENTER | 6:10 | 7:18 | 9:25 | 12:25 | 13:55 | 15:10 |
| TRAIN DEPARTS | 6:38 | 7:50 | 9:50 | 12:50 | 14:20 | 15:45 |
| TRAIN NUMBERS | 655 | 657 | 661 | 663 | 665 | |
| SAN YSIDRO/TIJUANA | 14:59 | 15:37 | 16:07 | 16:59 | 17:29 | |
| BEYER BOULEVARD | 15:03 | 15:41 | 16:11 | 17:03 | 17:33 | |
| IRIS AVENUE TRANSIT CENTER | 15:06 | 15:44 | 16:14 | 17:06 | 17:36 | |
| PALM AVENUE | 15:09 | 15:47 | 16:17 | 17:09 | 17:39 | |
| PALOMAR STREET | 15:11 | 15:49 | 16:19 | 17:11 | 17:41 | |
| H STREET | 15:15 | 15:53 | 16:23 | 17:15 | 17:45 | |
| BAYFRONT/E STREET | 15:17 | 15:55 | 16:25 | 17:17 | 17:47 | |
| 24TH STREET | 15:21 | 15:59 | 16:29 | 17:21 | 17:51 | |
| 8TH STREET | 15:23 | 16:01 | 16:31 | 17:23 | 17:53 | |
| PACIFIC FLEET | 15:25 | 16:03 | 16:33 | 17:25 | 17:55 | |
| HARBORSIDE | 15:27 | 16:05 | 16:35 | 17:27 | 17:57 | |
| BARRIO LOGAN | 15:29 | 16:07 | 16:37 | 17:29 | 17:59 | |
| IMPERIAL & 12TH TRANSIT CENTER | 15:31 | 16:09 | 16:39 | 17:31 | 18:01 | |
| PARK & MARKET | 15:33 | 16:11 | 16:41 | 17:33 | 18:03 | |
| CITY COLLEGE/SMART CORNER | 15:36 | 16:14 | 16:44 | 17:36 | 18:06 | |
| FIFTH AVENUE | 15:38 | 16:16 | 16:46 | 17:38 | 18:08 | |
| CIVIC CENTER | 15:40 | 16:18 | 16:48 | 17:40 | 18:10 | |
| AMERICA PLAZA | 15:43 | 16:21 | 16:51 | 17:43 | 18:13 | |
| SANTA FE DEPOT | 15:45 | 16:23 | 16:53 | 17:45 | 18:15 | |
| COUNTY CENTER/LITTLE ITALY | 15:46 | 16:24 | 16:54 | 17:46 | 18:16 | |
| MIDDLETOWN/PALM STREET | 15:48 | 16:26 | 16:56 | 17:48 | 18:18 | |
| WASHINGTON STREET | 15:50 | 16:28 | 16:58 | 17:50 | 18:20 | |
| OLD TOWN TRANSIT CENTER | 15:55 | 16:33 | 17:03 | 17:50 | 18:25 | |
| TRAIN DEPARTS | 16:27 | 16:57 | 17:28 | 18:15 | 18:51 |
